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Table 2 Molecular effects of the ENMs mentioned in the analysed papers (first column), linked to 64 KEs in the AOP-Wiki (AOP-Wiki IDs of the KEs are reported in third column) of which 11 are MIEs (AOP-Wiki IDs of KEs that are MIEs are reported in the second column)

From: From papers to RDF-based integration of physicochemical data and adverse outcome pathways for nanomaterials

Molecular effects described in paper

AOP-Wiki ID—MIE

AOP-Wiki ID—KE

Activating the NLRP3 inflammasomes

NA

1895

Activation of Nrf2 signaling pathway and increased catalase activity

478

478

Activation of post-transcriptional mechanism

NA

NA

Activation of signaling molecules

NA

NA

Alter genome methylation

NA

1773;1778;1622;1827;1620

Alveolar Macrophage activation

NA

1198;1754

Apoptosis

NA

55;1262;1513;1365;1817;1825;1864

Apoptotic stimuli

NA

55;1262;1513;1365;1817;1825;1864

Carcinogenicity

NA

885;1556;1395;1670;1193;1839;1651

Cell cycle regulation/progression/control

NA

854;1555;870;269

Cellular sensing of substance or substance induced damage

1437

1437;1459

Cellular sensing of the substance-induced Damage resulting in the release of danger signals

1437

1437;1459

Condensed cellular size with reduced numbers of protrusions

NA

NA

Cytoskeleton remodeling

NA

NA

Decreased inflammatory response

NA

152

Direct stress of epithelium

NA

1586

Disrupt macrophage function

NA

NA

DNA damage

1194

1461;1551;1194;1766;1635;1669

Genotoxicity

1194

1461;1551;1194;1766;1635;1669

Histone modifications

1502

1502;1503

Increased the number and length of protrusions

NA

NA

Inducing membranolysis

NA

169;1498

Induction of IL1β and TNFα

NA

1492;134;1579;1577;1496

Induction of IL6

NA

87;1493

Induction of oxidative stress (CoO > Fe3O4  SiO2)

1753;1592;257

1364;257;1115;249;1278;1753;1592

Inhibition of cellular receptors (dopaminergic, adrenergic, cannabinoid)

NA

1083

Interact with skin proteins

396

396

Interaction with lung cells

1495

1495

Interference with signaling molecules

NA

NA

Interruption of calcium sensing receptors

1529

1529

Lysosomal injury

NA

898;831;1540

Mitochondrial dysfunction

177

177

No effect

NA

NA

Production of free radicals

1753;1592;257

1364;257;1115;249;1278;1753;1592

Proliferation

NA

854;1555;870;269

Promoted activities of SOD and Gpx

NA

NA

Pulmonary and cardiac effects

NA

NA

Pulmonary inflammation

NA

1438

Reactions with endogenous molecules

NA

NA

ROS (increases in the levels of malondialdehyde (MDA))

1753;1592;257

1364;257;1115;249;1278;1753;1592

ROS production

1753;1592;257

1364;257;1115;249;1278;1753;1592

ROS production through endoplasmic reticulum stress

1753;1592;257

1364;257;1115;249;1278;1753;1592

Surface silanol disorganization

NA

NA